Publications
Below you can find a list of our published research.
Below you can find a list of our published research.
9543 results
Environmental microbiology, Volume 27, Issue 5, 1 1 2025, Pages e70113 Patchy Distribution of Potato Cyst Nematodes Within Single Arable Fields Reveals Local Disease Suppressiveness Mediated by Disparate Microbial Communities. van Himbeeck R, Geisen S, van Schaik C, van den Elsen S, Berendsen R, Bertran A, Schepel E, Helder J
Disease suppressiveness is a complex phenomenon that is assumed to be the resultant of the actions of local microbial antagonists. Exploitation of disease suppressiveness as a tool to manage pathogens is hindered by our poor understanding of this phenomenon. Here we investigated soil microbiome-based suppression of potato cyst nematodes (PCN), and to this end, four apparently homogeneous potato fields with an unexplained non-homogeneous PCN distribution were selected. We hypothesised that this p... Abstract
Cited 3 times since 2025 (5.3 per year) source: EuropePMC
Brain : a journal of neurology, Volume 148, Issue 5, 1 1 2025, Pages 1531-1539 N-methyl-d-aspartate receptor hypofunction causes recurrent and transient failures of perceptual inference. Weilnhammer V, Rothkirch M, Yilmaz D, Fritsch M, Ptasczynski LE, Reichenbach K, Roediger L, Corlett P, Sterzer P
Perception integrates external sensory signals with internal predictions that reflect prior knowledge about the world. Previous research suggests that this integration is governed by slow alternations between an external mode, driven by sensory signals, and an internal mode, shaped by prior knowledge. Using a double-blind, placebo-controlled, cross-over experiment in healthy human participants, we investigated the effects of the N-methyl-D-aspartate receptor (NMDAR) antagonist S-ketamine on the... Abstract
Frontiers in microbiology, Volume 16, 30 5 2025, Pages 1582703 Rapid extended-spectrum beta-lactamase-confirmation by using a machine learning model directly on routine automated susceptibility testing results. Ghouch YE, Schut MC, Sigaloff KCE, Altorf-Van Der Kuil W, Prins JM, Schade RP, ISIS-AR study group
Objectives: Phenotypical Extended Spectrum β-Lactamase (ESBL)-production is commonly determined using the combination disk diffusion test or gradient test. This requires overnight incubation, prolonging time-to-detection and increasing duration of empirical treatment for patients with infections caused by gram-negative bacteria. To achieve instant confirmation without incubation, we developed a machine learning (ML)-model that predicts phenotypic ESBL-confirmation using Minimum Inhibitory Concen... Abstract
Cited 3 times since 2025 (5.3 per year) source: EuropePMC
European journal of cancer (Oxford, England : 1990), Volume 224, 30 5 2025, Pages 115483 Dose-individualisation of fluoropyrimidines based on pre-treatment serum uracil levels: the Alpe2U study. Knikman JE, de With M, Heersche N, Lopez-Yurda M, Baars A, Creemers GJ, Droogendijk HJ, Fiets E, Imholz ALT, Iersel LV, Mandigers CMPW, van de Vendel AJ, Jeurissen FJF, Nieboer P, Deenen MJ, van de Poel MHW, Wymenga MNM, van Schaik RHN, van den Bosch BJC, Hoop EO, Rosing H, Swen JJ, Gelderblom H, Schellens JHM, Beijnen JH, Mathijssen RHJ, Guchelaar HJ, Cats A
Background: DPYD-guided dosing enhances safety of fluoropyrimidine-based chemotherapy. However, approximately 23 % of patients still experience severe toxicity unexplained by the four commonly tested DPYD-variant alleles. Elevated pre-treatment uracil levels have been proposed as a surrogate marker for reduced DPD activity and an independent predictor of toxicity. This prospective study evaluated whether uracil-guided dose individualisation can reduce severe fluoropyrimidine-induced toxicity in... Abstract
Portuguese journal of cardiac thoracic and vascular surgery, Volume 32, Issue 1, 29 5 2025, Pages 25-33 Surgical Aortic Valve Replacement For Bicuspid And Tricuspid Valve Disease: 7-Year Outcomes In >1100 Patients. Labrousse L, Moront MG, Dagenais F, Reardon MJ, Deeb GM, Günzinger R, Ruel M, Wu T, Klautz RJM, Sabik JF
Introduction: Bicuspid aortic valve affects 0.5-2% of the population in developed countries. Given uncertainties about the best aortic valve replacement (AVR) option in this often younger, low-risk, population, it is important to understand how newer bioprostheses perform in these patients. The primary objective of this analysis was to compare 7-year outcomes of surgical AVR (SAVR) with the Avalus bioprosthesis between patients with a congenital bicuspid or tricuspid valve. Methods: This prospec... Abstract
Cited 1 times since 2025 (1.8 per year) source: EuropePMC
ASAIO journal (American Society for Artificial Internal Organs : 1992), 29 5 2025 Bridging Therapy and Risk of Bleeding and Thrombosis in Continuous-Flow Left Ventricular Assist Device Patients: A Quasi-Experimental Study. Camilleri E, Roovers RPW, Janssen E, Krommenhoek JF, Klok FA, Palmen M, Jukema JW, van Rein N, Tops LF
Bridging with low-molecular-weight heparin (LMWH) is recommended in continuous-flow left ventricular assist device (CF-LVAD) patients during subtherapeutic international normalized ratios (INRs). We aimed to assess the risk of adverse events during bridging in patients implanted at Leiden University Medical Center between 2010 and 2024. Incidence rates and hazard ratios of major bleeding, thromboembolic events, neurologic complications, and death with 95% confidence intervals (95% CI) were estim... Abstract
Scandinavian journal of surgery : SJS : official organ for the Finnish Surgical Society and the Scandinavian Surgical Society, Volume 114, Issue 2, 29 5 2025, Pages 172 Sex differences as a catalyst for the next step in surgeon personality research. Sier JA, van der Vorst JR, Sier VQ
The Pediatric infectious disease journal, Volume 44, Issue 9, 28 4 2025, Pages e354-e357 Listeria Meningitis in Pediatric Patient with Associated Pneumonia Presenting with Refractory Status Epilepticus: Expanding the Clinical Spectrum of an Underrecognized Entity. Kuş S, Alataş ŞÖ, Tüz AE, Dündar NO, Durak F, Yilmaz D
Nederlands tijdschrift voor geneeskunde, Volume 169, 28 4 2025, Pages D8365 [Bilateral femoral fractures due to bisphosphonate use]. Reijmer JFH, van Schaik TJA, Vermeulen MAR, van der Stappen WJM, Strang S
The risk of an atypical femoral fracture increases with the use of bisphosphonates for longer than 5 years. The typical presentation of an atypical femoral fracture consists of a transverse subtrochanteric femoral fracture originating from the lateral cortex with a medial spike, occurring after minimal or no trauma. For patients presenting with a spontaneous femoral fracture who are using bisphosphonates, it is recommended to discontinue bisphosphonate use and to determine the future fracture ri... Abstract
CJC open, Volume 7, Issue 7, 27 4 2025, Pages 967-968 Dual Sinus Origins of the Left Coronary Artery From the Right and Left Coronary Sinus. Oliveri F, Van Oort M, Van der Kley F, Jukema JW, Montero-Cabezas J
Revista espanola de cardiologia (English ed.), Volume 78, Issue 10, 25 4 2025, Pages 860-862 Prognostic benefit of percutaneous revascularization for chronic total coronary occlusions. Paradoxes and contradictions in an endless debate. Jurado-Román A, Montero-Cabezas JM
Journal of thrombosis and haemostasis : JTH, Volume 23, Issue 11, 25 4 2025, Pages 3561-3568 Intermittent compression devices as antithrombotic strategy in neurosurgical interventions: a prospective randomized controlled trial (Trial In Prevention of Post-Operative ThromboEmbolic Events). Zhang Z, Marcano A, Huisman MV, van Schaik J, Cannegieter S, Vleggeert-Lankamp CLA
Background: Postoperative venous thrombosis is linked to high morbidity and mortality and the risk is heightened in neurosurgical patients due to prolonged immobilization, hypercoagulability, and long surgeries. Optimal prophylaxis under debate and variations in practices are prevalent. Objective: To assess the effectiveness of limb intermittent compression devices (ICD) combined with subcutaneous low-molecular-weight heparin (LMWH) compared with LMWH alone as a prophylactic strategy for venous... Abstract
European journal of heart failure, 25 4 2025 Heart failure in patients with a systemic right ventricle: A multicentre study with long-term follow-up. Ansari Ramandi MM, Budts W, Roos-Hesselink JW, Helbing WA, Egorova AD, Bouma BJ, Duijnhouwer A, van Kimmenade R, Sieswerda GT, Konings TC, Wagenaar LJ, Ubachs JFA, Berger RMF, Hoendermis ES, Voors AA, van Melle JP
Aims: Adult patients with transposition of the great arteries (TGA) and an systemic right ventricle (sRV) are at risk for heart failure (HF). In this study, we investigated risk factors for HF hospitalization and developed a novel risk stratification tool to optimize risk prediction for clinical practice. Methods and results: In this international multicentre study, 522 patients with TGA and an sRV, without history of HF hospitalization, were followed retrospectively for a median of 17.9 years (... Abstract
Cited 1 times since 2025 (1.7 per year) source: EuropePMC
JACC. Advances, Volume 4, Issue 5, 25 4 2025, Pages 101728 Investigating the Anrep Effect in Hypertrophic Obstructive Cardiomyopathy With Invasive Pressure-Volume Analysis. Reil JC, Sequeira V, Reil GH, Scholtz S, Rudolph V, Maack C, Serruys P, Steendijk P
Background: The Anrep effect, an adaptation enhancing left ventricular (LV) contractility in response to raised afterload, is hypothesized to influence hypertrophic cardiomyopathy pathophysiology. Objectives: This study investigated the activation and reversibility of the Anrep effect in obstructive hypertrophic cardiomyopathy (HOCM) patients undergoing percutaneous transluminal septal myocardial ablation (PTSMA) to relieve LV outflow tract obstruction. Methods: Invasive pressure-volume (PV) ana... Abstract
Cited 8 times since 2025 (13.8 per year) source: EuropePMC
eLife, Volume 13, 25 4 2025, Pages RP99116 Major nuclear locales define nuclear genome organization and function beyond A and B compartments. Gholamalamdari O, van Schaik T, Wang Y, Kumar P, Zhang L, Zhang Y, Gonzalez GAH, Vouzas AE, Zhao PA, Gilbert DM, Ma J, van Steensel B, Belmont AS
Models of nuclear genome organization often propose a binary division into active versus inactive compartments yet typically overlook nuclear bodies. Here, we integrated analysis of sequencing and image-based data to compare genome organization in four human cell types relative to three different nuclear locales: the nuclear lamina, nuclear speckles, and nucleoli. Although gene expression correlates mostly with nuclear speckle proximity, DNA replication timing correlates with proximity to multip... Abstract
Journal of thoracic disease, Volume 17, Issue 4, 25 4 2025, Pages 2194-2205 Early versus late chest tube removal after surgery for primary spontaneous pneumothorax-a systematic review and meta-analysis. van Steenwijk QCA, Spaans LN, Braun J, Dijkgraaf MGW, van den Broek FJC
Background: The optimal timing of postoperative chest tube removal remains disputable. Traditionally, chest tubes are left in place for several days for adequate pleurodesis and recurrence prevention after surgery for primary spontaneous pneumothorax (PSP). Currently, early tube removal, defined as immediate removal upon cessation of air leakage, is increasingly practiced. This study aimed to evaluate the safety of early chest tube removal in terms of recurrence in these patients. Methods: MEDLI... Abstract
Cited 1 times since 2025 (1.7 per year) source: EuropePMC
Imaging neuroscience (Cambridge, Mass.), Volume 3, 24 4 2025, Pages imag_a_00552 Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease. Gao C, Kim ME, Ramadass K, Kanakaraj P, Krishnan AR, Saunders AM, Newlin NR, Lee HH, Yang Q, Taylor WD, Boyd BD, Beason-Held LL, Resnick SM, Barnes LL, Bennett DA, Albert MS, Van Schaik KD, Archer DB, Hohman TJ, Jefferson AL, Išgum I, Moyer D, Huo Y, Schilling KG, Zuo L, Bao S, Mohd Khairi N, Li Z, Davatzikos C, Landman BA
Estimated brain age from magnetic resonance image (MRI) and its deviation from chronological age can provide early insights into potential neurodegenerative diseases, supporting early detection and implementation of prevention strategies to slow disease progression and onset. Diffusion MRI (dMRI), a widely used modality for brain age estimation, presents an opportunity to build an earlier biomarker for neurodegenerative disease prediction because it captures subtle microstructural changes that p... Abstract
Cardiology and therapy, Volume 14, Issue 2, 23 4 2025, Pages 219-230 Defibrillation Threshold Testing After ICD Implantation in Patients with Chronic Kidney Disease. Timal RJ, Osman L, Rotmans JI, Bootsma M, Mertens B, Schalij MJ, Rabelink TJ, Jukema JW
Introduction: Routine defibrillation threshold (DFT) testing at the time of implantable cardioverter-defibrillator (ICD) implantation is no longer recommended because testing did not improve shock efficacy or reduce arrhythmic death. However, patients with severe chronic kidney disease (CKD) were not included in these trials and might benefit from DFT testing. International guidelines shed no light on the subject of the effect of kidney function on DFT testing in patients with CKD. Methods: In t... Abstract
Cited 1 times since 2025 (1.7 per year) source: EuropePMC
JACC. Cardiovascular imaging, Volume 18, Issue 7, 23 4 2025, Pages 784-795 Prognostic Time Frame of Plaque and Hemodynamic Characteristics and Integrative Risk Prediction for Acute Coronary Syndrome. Yang S, Jung JW, Park SH, Zhang J, Lee K, Hwang D, Lee KS, Na SH, Doh JH, Nam CW, Kim TH, Shin ES, Chun EJ, Choi SY, Kim HK, Hong YJ, Park HJ, Kim SY, Husic M, Lambrechtsen J, Jensen JM, Nørgaard BL, Andreini D, Maurovich-Horvat P, Merkely B, Penicka M, de Bruyne B, Ihdayhid A, Ko B, Tzimas G, Leipsic J, Sanz J, Rabbat MG, Katchi F, Shah M, Tanaka N, Nakazato R, Asano T, Terashima M, Takashima H, Amano T, Sobue Y, Matsuo H, Otake H, Kubo T, Takahata M, Akasaka T, Kido T, Mochizuki T, Yokoi H, Okonogi T, Kawasaki T, Nakao K, Sakamoto T, Yonetsu T, Kakuta T, Yamauchi Y, Taylor CA, Bax JJ, Shaw LJ, Stone PH, Narula J, Koo BK
Background: The relevant time frame for predicting future acute coronary syndrome (ACS) based on coronary lesion characteristics remains uncertain. Objectives: The aim of this study was to investigate the association of lesion characteristics with test-to-event time and their prognostic impact on ACS. Methods: The EMERALD II (Exploring the Mechanism of Plaque Rupture in Acute Coronary Syndrome Using Coronary CT Angiography and Computational Fluid Dynamics II) study analyzed 351 patients who unde... Abstract
Cited 1 times since 2025 (1.7 per year) source: EuropePMC
BMJ open, Volume 15, Issue 4, 22 4 2025, Pages e093615 C-reactive protein in the first 30 postoperative days and its discriminative value as a marker for postoperative infections, a multicentre cohort study. van Boekel AM, van der Meijden SL, Geerts BF, van Goor H, van Geloven N, Arbous MS, de Boer MGJ, PERISCOPE Study Group
Objective: To assess the association of C-reactive protein (CRP) with postoperative infections for eight different types of surgery using big data. Design: A multicentre cohort study with longitudinally collected data from electronic health records, collected from 1 January 2011 to 22 September 2023. Setting: Data of two tertiary medical centres in the Netherlands were used. Participants: This study included all procedures (42 125 in total) in adult patients undergoing surgery in two tertiary me... Abstract